J3_9BDL_028

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDL_028 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1049

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9BDL|1|A18S|U|1350
9BDL|1|A18S|G|1351
*
9BDL|1|A18S|U|1360
9BDL|1|A18S|G|1361
9BDL|1|A18S|U|1362
9BDL|1|A18S|C|1363
*
9BDL|1|A18S|G|1375
9BDL|1|A18S|A|1376
9BDL|1|A18S|U|1377
9BDL|1|A18S|A|1378
9BDL|1|A18S|A|1379

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS00

40S_SA_C domain-containing protein

Chain AS02

40S ribosomal protein S2

Chain AS17

40S ribosomal protein S17