J3_9BDL_030
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9BDL|1|A28S|U|354, 9BDL|1|A28S|A|362, 9BDL|1|A58S|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDL_030 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0559
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9BDL|1|A28S|C|351
9BDL|1|A28S|G|352
9BDL|1|A28S|A|353
9BDL|1|A28S|U|354
9BDL|1|A28S|A|355
9BDL|1|A28S|G|356
9BDL|1|A28S|U|357
9BDL|1|A28S|C|358
9BDL|1|A28S|A|359
9BDL|1|A28S|A|360
9BDL|1|A28S|C|361
9BDL|1|A28S|A|362
9BDL|1|A28S|A|363
9BDL|1|A28S|G|364
9BDL|1|A28S|U|365
9BDL|1|A28S|A|366
9BDL|1|A28S|C|367
*
9BDL|1|A28S|G|374
9BDL|1|A28S|G|375
9BDL|1|A28S|A|376
9BDL|1|A28S|A|377
9BDL|1|A28S|A|378
9BDL|1|A28S|G|379
*
9BDL|1|A58S|C|21
9BDL|1|A58S|U|22
9BDL|1|A58S|C|23
9BDL|1|A58S|G|24
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL26
- 60S ribosomal protein L26
- Chain AL37
- 60S ribosomal protein L37
- Chain AL39
- 60S ribosomal protein L39
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