J3_9BDN_011

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9BDN|1|A28S|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|C|112
9BDN|1|A28S|A|113
9BDN|1|A28S|G|114
9BDN|1|A28S|C|115
9BDN|1|A28S|G|116
*
9BDN|1|A28S|C|155
9BDN|1|A28S|G|156
9BDN|1|A28S|U|157
9BDN|1|A28S|A|158
9BDN|1|A28S|C|159
9BDN|1|A28S|G|160
*
9BDN|1|A28S|C|275
9BDN|1|A28S|C|276
9BDN|1|A28S|G|277
9BDN|1|A28S|G|278

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL08

Large ribosomal subunit protein eL8

Chain AL13

Large ribosomal subunit protein eL13

Chain AL15

60S ribosomal protein L15

Chain AL35

60S ribosomal protein L35

Chain AL36

60S ribosomal protein L36