J3_9BDN_020

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9BDN|1|A28S|A|4464, 9BDN|1|A28S|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDN_020 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.0877

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_62630.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9BDN|1|A28S|U|4463
9BDN|1|A28S|A|4464
9BDN|1|A28S|U|4465
9BDN|1|A28S|C|4466
*
9BDN|1|A28S|G|4491
9BDN|1|A28S|U|4492
9BDN|1|A28S|U|4493
*
9BDN|1|A28S|A|4507
9BDN|1|A28S|C|4508
9BDN|1|A28S|U|4509
9BDN|1|A28S|A|4510
9BDN|1|A28S|A|4511
9BDN|1|A28S|U|4512
9BDN|1|A28S|A|4513

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL16

Large ribosomal subunit protein uL13

Chain AL23

60S ribosomal protein L23