J3_9BDN_023

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDN_023 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1086

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

9BDN|1|A18S|A|40
9BDN|1|A18S|G|41
*
9BDN|1|A18S|C|481
9BDN|1|A18S|G|482
9BDN|1|A18S|C|483
9BDN|1|A18S|A|484
9BDN|1|A18S|A|485
9BDN|1|A18S|A|486
9BDN|1|A18S|U|487
*
9BDN|1|A18S|A|512
9BDN|1|A18S|G|513
9BDN|1|A18S|U|514

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS23

40S ribosomal protein S23