J3_9BDN_026

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDN_026 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1434

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9BDN|1|A18S|U|1350
9BDN|1|A18S|G|1351
*
9BDN|1|A18S|U|1360
9BDN|1|A18S|G|1361
9BDN|1|A18S|U|1362
9BDN|1|A18S|C|1363
*
9BDN|1|A18S|G|1375
9BDN|1|A18S|A|1376
9BDN|1|A18S|U|1377
9BDN|1|A18S|A|1378
9BDN|1|A18S|A|1379

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS00

40S_SA_C domain-containing protein

Chain AS02

40S ribosomal protein S2

Chain AS17

40S ribosomal protein S17