3D structure

PDB id
9BDN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with angiogenin and tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
9BDN|1|A28S|U|354, 9BDN|1|A28S|A|362, 9BDN|1|A58S|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9BDN_027 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0595
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

9BDN|1|A28S|C|351
9BDN|1|A28S|G|352
9BDN|1|A28S|A|353
9BDN|1|A28S|U|354
9BDN|1|A28S|A|355
9BDN|1|A28S|G|356
9BDN|1|A28S|U|357
9BDN|1|A28S|C|358
9BDN|1|A28S|A|359
9BDN|1|A28S|A|360
9BDN|1|A28S|C|361
9BDN|1|A28S|A|362
9BDN|1|A28S|A|363
9BDN|1|A28S|G|364
9BDN|1|A28S|U|365
9BDN|1|A28S|A|366
9BDN|1|A28S|C|367
*
9BDN|1|A28S|G|374
9BDN|1|A28S|G|375
9BDN|1|A28S|A|376
9BDN|1|A28S|A|377
9BDN|1|A28S|A|378
9BDN|1|A28S|G|379
*
9BDN|1|A58S|C|21
9BDN|1|A58S|U|22
9BDN|1|A58S|C|23
9BDN|1|A58S|G|24

Current chains

Chain A28S
28S rRNA
Chain A58S
5.8S rRNA

Nearby chains

Chain AL04
60S ribosomal protein L4
Chain AL26
60S ribosomal protein L26
Chain AL37
60S ribosomal protein L37
Chain AL39
60S ribosomal protein L39

Coloring options:


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