J3_9BDN_027
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9BDN|1|A28S|U|354, 9BDN|1|A28S|A|362, 9BDN|1|A58S|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDN_027 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0595
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
9BDN|1|A28S|C|351
9BDN|1|A28S|G|352
9BDN|1|A28S|A|353
9BDN|1|A28S|U|354
9BDN|1|A28S|A|355
9BDN|1|A28S|G|356
9BDN|1|A28S|U|357
9BDN|1|A28S|C|358
9BDN|1|A28S|A|359
9BDN|1|A28S|A|360
9BDN|1|A28S|C|361
9BDN|1|A28S|A|362
9BDN|1|A28S|A|363
9BDN|1|A28S|G|364
9BDN|1|A28S|U|365
9BDN|1|A28S|A|366
9BDN|1|A28S|C|367
*
9BDN|1|A28S|G|374
9BDN|1|A28S|G|375
9BDN|1|A28S|A|376
9BDN|1|A28S|A|377
9BDN|1|A28S|A|378
9BDN|1|A28S|G|379
*
9BDN|1|A58S|C|21
9BDN|1|A58S|U|22
9BDN|1|A58S|C|23
9BDN|1|A58S|G|24
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL26
- 60S ribosomal protein L26
- Chain AL37
- 60S ribosomal protein L37
- Chain AL39
- 60S ribosomal protein L39
Coloring options: