J3_9BDN_028
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDN_028 not in the Motif Atlas
- Geometric match to J3_4WF9_010
- Geometric discrepancy: 0.087
- The information below is about J3_4WF9_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
9BDN|1|A28S|U|380
9BDN|1|A28S|U|381
9BDN|1|A28S|G|382
9BDN|1|A28S|A|383
9BDN|1|A28S|A|384
9BDN|1|A28S|A|385
9BDN|1|A28S|A|386
9BDN|1|A28S|G|387
*
9BDN|1|A28S|C|414
9BDN|1|A28S|G|415
*
9BDN|1|A58S|C|19
9BDN|1|A58S|A|20
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL26
- 60S ribosomal protein L26
- Chain AL39
- 60S ribosomal protein L39
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