J3_9BDN_031

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9BDN|1|A28S|A|1805, 9BDN|1|A28S|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDN_031 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4271

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_09667.1

Basepair signature

cWW-cWW-F-F-cSS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

9BDN|1|A28S|U|1726
9BDN|1|A28S|U|1727
*
9BDN|1|A28S|A|1802
9BDN|1|A28S|G|1803
9BDN|1|A28S|A|1804
9BDN|1|A28S|A|1805
9BDN|1|A28S|G|1806
*
9BDN|1|A28S|C|1832
9BDN|1|A28S|G|1833
9BDN|1|A28S|U|1834
9BDN|1|A28S|G|1835
9BDN|1|A28S|G|1836
9BDN|1|A28S|A|1837

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL07

60S ribosomal protein L7

Chain AL21

60S ribosomal protein L21

Chain AL29

Large ribosomal subunit protein eL29