J3_9BDN_034

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDN_034 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1647

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9BDN|1|A28S|A|2598
9BDN|1|A28S|G|2599
9BDN|1|A28S|A|2600
9BDN|1|A28S|A|2601
9BDN|1|A28S|G|2602
*
9BDN|1|A28S|C|2737
9BDN|1|A28S|C|2738
*
9BDN|1|A28S|G|2742
9BDN|1|A28S|A|2743
9BDN|1|A28S|A|2744
9BDN|1|A28S|A|2745
9BDN|1|A28S|A|2746
9BDN|1|A28S|U|2747

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL34

60S ribosomal protein L34

Chain AL43

60S ribosomal protein L37a