J3_9BDN_035
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9BDN|1|A28S|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDN_035 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0879
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9BDN|1|A28S|G|4228
9BDN|1|A28S|U|4229
9BDN|1|A28S|C|4230
*
9BDN|1|A28S|G|4331
9BDN|1|A28S|C|4332
9BDN|1|A28S|C|4333
9BDN|1|A28S|U|4334
9BDN|1|A28S|C|4335
9BDN|1|A28S|A|4336
9BDN|1|A28S|C|4337
9BDN|1|A28S|G|4338
9BDN|1|A28S|A|4339
9BDN|1|A28S|U|4340
9BDN|1|A28S|C|4341
9BDN|1|A28S|C|4342
*
9BDN|1|A28S|G|4370
9BDN|1|A28S|G|4371
9BDN|1|A28S|U|4372
9BDN|1|A28S|G|4373
9BDN|1|A28S|U|4374
9BDN|1|A28S|C|4375
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL18
- Large ribosomal subunit protein eL18
- Chain AL21
- 60S ribosomal protein L21
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL42
- eL42
- Chain ETRN
- Transfer RNA; tRNA
Coloring options: