J3_9BDP_013

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9BDP|1|A28S|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDP_013 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1152

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

9BDP|1|A28S|C|2393
9BDP|1|A28S|G|2394
9BDP|1|A28S|A|2395
9BDP|1|A28S|A|2396
9BDP|1|A28S|G|2397
9BDP|1|A28S|U|2398
9BDP|1|A28S|G|2399
*
9BDP|1|A28S|C|2805
9BDP|1|A28S|A|2806
9BDP|1|A28S|A|2807
*
9BDP|1|A28S|U|2819
9BDP|1|A28S|C|2820
9BDP|1|A28S|U|2821
9BDP|1|A28S|G|2822

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL34

60S ribosomal protein L34