J3_9BDP_032

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

9BDP|1|A28S|G|409, 9BDP|1|A28S|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDP_032 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.2959

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9BDP|1|A28S|U|380
9BDP|1|A28S|U|381
9BDP|1|A28S|G|382
9BDP|1|A28S|A|383
9BDP|1|A28S|A|384
9BDP|1|A28S|A|385
9BDP|1|A28S|A|386
9BDP|1|A28S|G|387
9BDP|1|A28S|A|388
9BDP|1|A28S|A|389
9BDP|1|A28S|C|390
*
9BDP|1|A28S|G|401
9BDP|1|A28S|A|402
9BDP|1|A28S|G|403
9BDP|1|A28S|U|404
9BDP|1|A28S|U|405
9BDP|1|A28S|C|406
9BDP|1|A28S|A|407
9BDP|1|A28S|A|408
9BDP|1|A28S|G|409
9BDP|1|A28S|A|410
9BDP|1|A28S|G|411
9BDP|1|A28S|G|412
9BDP|1|A28S|G|413
9BDP|1|A28S|C|414
9BDP|1|A28S|G|415
*
9BDP|1|A58S|C|19
9BDP|1|A58S|A|20

Current chains

Chain A28S

28S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL17

60S ribosomal protein L17

Chain AL26

60S ribosomal protein L26

Chain AL39

60S ribosomal protein L39