J3_9BDP_034
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 9BDP|1|A28S|A|1805, 9BDP|1|A28S|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDP_034 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.4836
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BDP|1|A28S|U|1726
9BDP|1|A28S|U|1727
*
9BDP|1|A28S|A|1802
9BDP|1|A28S|G|1803
9BDP|1|A28S|A|1804
9BDP|1|A28S|A|1805
9BDP|1|A28S|G|1806
*
9BDP|1|A28S|C|1832
9BDP|1|A28S|G|1833
9BDP|1|A28S|U|1834
9BDP|1|A28S|G|1835
9BDP|1|A28S|G|1836
9BDP|1|A28S|A|1837
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL07
- 60S ribosomal protein L7
- Chain AL21
- 60S ribosomal protein L21
- Chain AL29
- Large ribosomal subunit protein eL29
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