J3_9BDP_036
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 9BDP|1|A28S|C|2470, 9BDP|1|A28S|A|2472, 9BDP|1|A28S|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDP_036 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5974
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
9BDP|1|A28S|A|2451
9BDP|1|A28S|G|2452
9BDP|1|A28S|A|2453
9BDP|1|A28S|U|2454
9BDP|1|A28S|G|2455
9BDP|1|A28S|G|2456
*
9BDP|1|A28S|C|2465
9BDP|1|A28S|G|2466
9BDP|1|A28S|U|2467
9BDP|1|A28S|U|2468
9BDP|1|A28S|C|2469
9BDP|1|A28S|C|2470
9BDP|1|A28S|G|2471
9BDP|1|A28S|A|2472
9BDP|1|A28S|A|2473
9BDP|1|A28S|G|2474
9BDP|1|A28S|G|2475
9BDP|1|A28S|G|2476
*
9BDP|1|A28S|C|2501
9BDP|1|A28S|A|2502
9BDP|1|A28S|G|2503
9BDP|1|A28S|C|2504
9BDP|1|A28S|C|2505
9BDP|1|A28S|G|2506
9BDP|1|A28S|A|2507
9BDP|1|A28S|U|2508
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL02
- 60S ribosomal protein L8
- Chain AL08
- Large ribosomal subunit protein eL8
- Chain AL15
- 60S ribosomal protein L15
- Chain AL25
- Large ribosomal subunit protein uL23
- Chain AL37
- 60S ribosomal protein L37
Coloring options: