J3_9BDP_044
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGG*UAAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 9BDP|1|A18S|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDP_044 not in the Motif Atlas
- Geometric match to J3_8P9A_071
- Geometric discrepancy: 0.1565
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9BDP|1|A18S|U|682
9BDP|1|A18S|G|683
9BDP|1|A18S|G|684
*
9BDP|1|A18S|U|918
9BDP|1|A18S|A|919
9BDP|1|A18S|A|920
9BDP|1|A18S|G|921
9BDP|1|A18S|A|922
*
9BDP|1|A18S|U|1022
9BDP|1|A18S|A|1023
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS07
- Small ribosomal subunit protein eS7
- Chain AS11
- 40S ribosomal protein S11
- Chain AS13
- 40S ribosomal protein S13
- Chain AS22
- 40S ribosomal protein S15a
- Chain AS23
- 40S ribosomal protein S23
- Chain AS27
- 40S ribosomal protein S27
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