J3_9BDP_047

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDP_047 not in the Motif Atlas

Homologous match to J3_8CRE_018

Geometric discrepancy: 0.1888

The information below is about J3_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9BDP|1|A28S|A|2598
9BDP|1|A28S|G|2599
9BDP|1|A28S|A|2600
9BDP|1|A28S|A|2601
9BDP|1|A28S|G|2602
*
9BDP|1|A28S|C|2737
9BDP|1|A28S|C|2738
*
9BDP|1|A28S|G|2742
9BDP|1|A28S|A|2743
9BDP|1|A28S|A|2744
9BDP|1|A28S|A|2745
9BDP|1|A28S|A|2746
9BDP|1|A28S|U|2747

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL34

60S ribosomal protein L34

Chain AL43

60S ribosomal protein L37a