J3_9BH5_010
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUUC*GCCCAACAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9BH5|1|B2|C|899
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_010 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1031
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BH5|1|B2|A|846
9BH5|1|B2|U|847
9BH5|1|B2|U|848
9BH5|1|B2|C|849
*
9BH5|1|B2|G|893
9BH5|1|B2|C|894
9BH5|1|B2|C|895
9BH5|1|B2|C|896
9BH5|1|B2|A|897
9BH5|1|B2|A|898
9BH5|1|B2|C|899
9BH5|1|B2|A|900
9BH5|1|B2|G|901
*
9BH5|1|B2|C|908
9BH5|1|B2|A|909
9BH5|1|B2|U|910
9BH5|1|B2|U|911
9BH5|1|B2|U|912
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AB
- Small ribosomal subunit protein eS1
- Chain AO
- Small ribosomal subunit protein uS11
- Chain Aa
- Small ribosomal subunit protein eS26
- Chain Cp
- Large ribosomal subunit protein eL43
Coloring options: