J3_9BH5_014
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUUAAUUU*GGGAAAACUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9BH5|1|B2|G|1158, 9BH5|1|B2|A|1160, 9BH5|1|B2|A|1162
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_014 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0589
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9BH5|1|B2|C|1139
9BH5|1|B2|U|1140
9BH5|1|B2|U|1141
9BH5|1|B2|A|1142
9BH5|1|B2|A|1143
9BH5|1|B2|U|1144
9BH5|1|B2|U|1145
9BH5|1|B2|U|1146
*
9BH5|1|B2|G|1157
9BH5|1|B2|G|1158
9BH5|1|B2|G|1159
9BH5|1|B2|A|1160
9BH5|1|B2|A|1161
9BH5|1|B2|A|1162
9BH5|1|B2|A|1163
9BH5|1|B2|C|1164
9BH5|1|B2|U|1165
9BH5|1|B2|C|1166
9BH5|1|B2|A|1167
9BH5|1|B2|C|1168
*
9BH5|1|B2|G|1410
9BH5|1|B2|G|1411
9BH5|1|B2|C|1412
9BH5|1|B2|U|1413
9BH5|1|B2|G|1414
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AP
- Small ribosomal subunit protein uS19
- Chain AS
- Small ribosomal subunit protein uS13
- Chain AU
- Small ribosomal subunit protein uS10
- Chain Ad
- Small ribosomal subunit protein uS14
- Chain DB
- Transfer RNA; tRNA
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