J3_9BH5_020
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAGU*GGUUG
- Length
- 29 nucleotides
- Bulged bases
- 9BH5|1|A5|U|349, 9BH5|1|A5|A|357, 9BH5|1|A8|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|C|346
9BH5|1|A5|G|347
9BH5|1|A5|A|348
9BH5|1|A5|U|349
9BH5|1|A5|A|350
9BH5|1|A5|G|351
9BH5|1|A5|C|352
9BH5|1|A5|G|353
9BH5|1|A5|A|354
9BH5|1|A5|A|355
9BH5|1|A5|C|356
9BH5|1|A5|A|357
9BH5|1|A5|A|358
9BH5|1|A5|G|359
9BH5|1|A5|U|360
9BH5|1|A5|A|361
9BH5|1|A5|C|362
*
9BH5|1|A5|G|369
9BH5|1|A5|G|370
9BH5|1|A5|A|371
9BH5|1|A5|A|372
9BH5|1|A5|A|373
9BH5|1|A5|G|374
9BH5|1|A5|U|375
*
9BH5|1|A8|G|20
9BH5|1|A8|G|21
9BH5|1|A8|U|22
9BH5|1|A8|U|23
9BH5|1|A8|G|24
Current chains
- Chain A5
- 28S rRNA
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CY
- Large ribosomal subunit protein uL24
- Chain Cj
- Ribosomal protein L37
- Chain Cl
- Large ribosomal subunit protein eL39
Coloring options: