J3_9BH5_026
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UACUG*CUUGUAUCAUC*GCUUG
- Length
- 21 nucleotides
- Bulged bases
- 9BH5|1|A5|U|1620, 9BH5|1|A5|A|1624, 9BH5|1|A5|U|1625, 9BH5|1|A5|U|1657, 9BH5|1|A5|U|1658
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|U|1603
9BH5|1|A5|A|1604
9BH5|1|A5|C|1605
9BH5|1|A5|U|1606
9BH5|1|A5|G|1607
*
9BH5|1|A5|C|1616
9BH5|1|A5|U|1617
9BH5|1|A5|U|1618
9BH5|1|A5|G|1619
9BH5|1|A5|U|1620
9BH5|1|A5|A|1621
9BH5|1|A5|U|1622
9BH5|1|A5|C|1623
9BH5|1|A5|A|1624
9BH5|1|A5|U|1625
9BH5|1|A5|C|1626
*
9BH5|1|A5|G|1655
9BH5|1|A5|C|1656
9BH5|1|A5|U|1657
9BH5|1|A5|U|1658
9BH5|1|A5|G|1659
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- Large ribosomal subunit protein uL2
- Chain CG
- Large ribosomal subunit protein eL8
- Chain CN
- Large ribosomal subunit protein eL15
- Chain CX
- Large ribosomal subunit protein uL23B
- Chain Cj
- Ribosomal protein L37
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