J3_9BH5_030
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGAG*CCUAUG*CCAGAUCACUCUGGUU
- Length
- 26 nucleotides
- Bulged bases
- 9BH5|1|A5|A|3328, 9BH5|1|A5|U|3329, 9BH5|1|A5|U|3379, 9BH5|1|A5|C|3380, 9BH5|1|A5|C|3384, 9BH5|1|A5|U|3385, 9BH5|1|A5|G|3387, 9BH5|1|A5|U|3388
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|G|3286
9BH5|1|A5|G|3287
9BH5|1|A5|A|3288
9BH5|1|A5|G|3289
*
9BH5|1|A5|C|3325
9BH5|1|A5|C|3326
9BH5|1|A5|U|3327
9BH5|1|A5|A|3328
9BH5|1|A5|U|3329
9BH5|1|A5|G|3330
*
9BH5|1|A5|C|3374
9BH5|1|A5|C|3375
9BH5|1|A5|A|3376
9BH5|1|A5|G|3377
9BH5|1|A5|A|3378
9BH5|1|A5|U|3379
9BH5|1|A5|C|3380
9BH5|1|A5|A|3381
9BH5|1|A5|C|3382
9BH5|1|A5|U|3383
9BH5|1|A5|C|3384
9BH5|1|A5|U|3385
9BH5|1|A5|G|3386
9BH5|1|A5|G|3387
9BH5|1|A5|U|3388
9BH5|1|A5|U|3389
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CE
- Large ribosomal subunit protein eL6
- Chain CM
- Large ribosomal subunit protein eL14
- Chain CO
- Large ribosomal subunit protein uL13
- Chain Cf
- Large ribosomal subunit protein eL33
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