J3_9BH5_033
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AG*CGAAACU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_033 not in the Motif Atlas
- Homologous match to J3_8P9A_068
- Geometric discrepancy: 0.0799
- The information below is about J3_8P9A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.2
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9BH5|1|B2|A|41
9BH5|1|B2|G|42
*
9BH5|1|B2|C|413
9BH5|1|B2|G|414
9BH5|1|B2|A|415
9BH5|1|B2|A|416
9BH5|1|B2|A|417
9BH5|1|B2|C|418
9BH5|1|B2|U|419
*
9BH5|1|B2|A|442
9BH5|1|B2|G|443
9BH5|1|B2|U|444
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AJ
- Small ribosomal subunit protein uS4
- Chain AX
- Small ribosomal subunit protein uS12
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