J3_9BH5_036

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGAG*CAAGC*GCUUGAAU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BH5|1|B2|A|728
9BH5|1|B2|G|729
9BH5|1|B2|A|730
9BH5|1|B2|G|731
*
9BH5|1|B2|C|741
9BH5|1|B2|A|742
9BH5|1|B2|A|743
9BH5|1|B2|G|744
9BH5|1|B2|C|745
*
9BH5|1|B2|G|750
9BH5|1|B2|C|751
9BH5|1|B2|U|752
9BH5|1|B2|U|753
9BH5|1|B2|G|754
9BH5|1|B2|A|755
9BH5|1|B2|A|756
9BH5|1|B2|U|757

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4

Chain AJ

Small ribosomal subunit protein uS4

Chain AY

Small ribosomal subunit protein eS24