J3_9BKD_012

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BKD_012 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.069

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

9BKD|1|A|A|40
9BKD|1|A|G|41
*
9BKD|1|A|C|481
9BKD|1|A|G|482
9BKD|1|A|C|483
9BKD|1|A|A2M|484
9BKD|1|A|A|485
9BKD|1|A|A|486
9BKD|1|A|U|487
*
9BKD|1|A|A|512
9BKD|1|A|G|513
9BKD|1|A|U|514

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain E

Small ribosomal subunit protein uS12