J3_9BKD_013
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 9BKD|1|A|A|46
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BKD_013 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0466
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BKD|1|A|A|40
9BKD|1|A|G|41
9BKD|1|A|A|42
9BKD|1|A|U|43
9BKD|1|A|U|44
9BKD|1|A|A|45
9BKD|1|A|A|46
9BKD|1|A|G|47
*
9BKD|1|A|C|479
9BKD|1|A|G|480
9BKD|1|A|C|481
9BKD|1|A|G|482
9BKD|1|A|C|483
9BKD|1|A|A2M|484
9BKD|1|A|A|485
9BKD|1|A|A|486
9BKD|1|A|U|487
*
9BKD|1|A|A|512
9BKD|1|A|G|513
9BKD|1|A|U|514
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain E
- Small ribosomal subunit protein uS12
Coloring options: