J3_9BKD_016
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BKD_016 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.0596
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BKD|1|A|U|1350
9BKD|1|A|G|1351
*
9BKD|1|A|U|1360
9BKD|1|A|G|1361
9BKD|1|A|U|1362
9BKD|1|A|C|1363
*
9BKD|1|A|G|1375
9BKD|1|A|A|1376
9BKD|1|A|U|1377
9BKD|1|A|A|1378
9BKD|1|A|A|1379
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S2
- Chain M
- 40S ribosomal protein S17
- Chain N
- Small ribosomal subunit protein uS2
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