J3_9BLN_013

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

9BLN|1|A|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BLN_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0544

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BLN|1|A|A|40
9BLN|1|A|G|41
9BLN|1|A|A|42
9BLN|1|A|U|43
9BLN|1|A|U|44
9BLN|1|A|A|45
9BLN|1|A|A|46
9BLN|1|A|G|47
*
9BLN|1|A|C|479
9BLN|1|A|G|480
9BLN|1|A|C|481
9BLN|1|A|G|482
9BLN|1|A|C|483
9BLN|1|A|A2M|484
9BLN|1|A|A|485
9BLN|1|A|A|486
9BLN|1|A|U|487
*
9BLN|1|A|A|512
9BLN|1|A|G|513
9BLN|1|A|U|514

Current chains

Chain A

rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain E

Small ribosomal subunit protein uS12