J3_9BLN_016
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BLN_016 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.0595
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BLN|1|A|U|1350
9BLN|1|A|G|1351
*
9BLN|1|A|U|1360
9BLN|1|A|G|1361
9BLN|1|A|U|1362
9BLN|1|A|C|1363
*
9BLN|1|A|G|1375
9BLN|1|A|A|1376
9BLN|1|A|U|1377
9BLN|1|A|A|1378
9BLN|1|A|A|1379
Current chains
- Chain A
- rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS5
- Chain M
- Small ribosomal subunit protein eS17
- Chain N
- Small ribosomal subunit protein uS2
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