J3_9BS0_001

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BS0_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1691

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9BS0|1|A|G|30
9BS0|1|A|C|31
*
9BS0|1|A|G|521
9BS0|1|A|U|522
9BS0|1|A|G|523
9BS0|1|A|A|524
9BS0|1|A|A|525
9BS0|1|A|A|526
9BS0|1|A|A|527
9BS0|1|A|G|528
*
9BS0|1|A|C|555
9BS0|1|A|C|556

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein bL20

Chain P

Large ribosomal subunit protein uL24