J3_9BS0_002
3D structure
- PDB id
- 9BS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- YphC-treated 45SYphC particle. Class 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9BS0|1|A|U|495, 9BS0|1|A|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BS0_002 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.1495
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9BS0|1|A|C|32
9BS0|1|A|U|33
9BS0|1|A|U|34
9BS0|1|A|G|35
*
9BS0|1|A|C|492
9BS0|1|A|G|493
9BS0|1|A|A|494
9BS0|1|A|U|495
9BS0|1|A|A|496
9BS0|1|A|G|497
9BS0|1|A|U|498
9BS0|1|A|G|499
9BS0|1|A|A|500
9BS0|1|A|A|501
9BS0|1|A|C|502
9BS0|1|A|C|503
9BS0|1|A|A|504
9BS0|1|A|G|505
9BS0|1|A|U|506
9BS0|1|A|A|507
9BS0|1|A|C|508
*
9BS0|1|A|G|515
9BS0|1|A|G|516
9BS0|1|A|A|517
9BS0|1|A|A|518
9BS0|1|A|A|519
9BS0|1|A|G|520
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain L
- Large ribosomal subunit protein bL20
- Chain O
- Large ribosomal subunit protein uL23
- Chain U
- Large ribosomal subunit protein bL34
Coloring options: