J3_9BS0_006

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BS0_006 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1382

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9BS0|1|A|C|745
9BS0|1|A|A|746
9BS0|1|A|G|747
*
9BS0|1|A|C|779
9BS0|1|A|G|780
9BS0|1|A|A|781
9BS0|1|A|A|782
9BS0|1|A|C|783
*
9BS0|1|A|G|807
9BS0|1|A|A|808
9BS0|1|A|U|809
9BS0|1|A|G|810

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2