J3_9BS0_007

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

9BS0|1|A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BS0_007 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1609

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9BS0|1|A|C|1337
9BS0|1|A|G|1338
9BS0|1|A|A|1339
9BS0|1|A|A|1340
9BS0|1|A|U|1341
9BS0|1|A|G|1342
*
9BS0|1|A|C|1670
9BS0|1|A|G|1671
9BS0|1|A|A|1672
*
9BS0|1|A|U|1684
9BS0|1|A|A|1685
9BS0|1|A|A|1686
9BS0|1|A|G|1687

Current chains

Chain A

23S rRNA

Nearby chains