J3_9BS0_008

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

9BS0|1|A|A|1654, 9BS0|1|A|A|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BS0_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.2081

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

9BS0|1|A|C|1344
9BS0|1|A|U|1345
9BS0|1|A|A|1346
9BS0|1|A|A|1347
9BS0|1|A|G|1348
*
9BS0|1|A|C|1650
9BS0|1|A|G|1651
9BS0|1|A|C|1652
9BS0|1|A|A|1653
9BS0|1|A|A|1654
9BS0|1|A|A|1655
9BS0|1|A|C|1656
*
9BS0|1|A|G|1665
9BS0|1|A|U|1666
9BS0|1|A|A|1667
9BS0|1|A|G|1668

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein bL34