J3_9BS0_009

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

9BS0|1|A|C|1384, 9BS0|1|A|A|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BS0_009 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1961

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

9BS0|1|A|U|1383
9BS0|1|A|C|1384
9BS0|1|A|G|1385
9BS0|1|A|G|1386
9BS0|1|A|G|1387
9BS0|1|A|A|1388
9BS0|1|A|C|1389
*
9BS0|1|A|G|1420
9BS0|1|A|A|1421
9BS0|1|A|C|1422
9BS0|1|A|A|1423
9BS0|1|A|A|1424
*
9BS0|1|A|U|1441
9BS0|1|A|A|1442

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL23