J3_9BS0_010

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BS0_010 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1009

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9BS0|1|A|G|1470
9BS0|1|A|G|1471
9BS0|1|A|G|1472
9BS0|1|A|A|1473
9BS0|1|A|C|1474
9BS0|1|A|G|1475
*
9BS0|1|A|C|1612
9BS0|1|A|C|1613
*
9BS0|1|A|G|1616
9BS0|1|A|A|1617
9BS0|1|A|A|1618
9BS0|1|A|A|1619
9BS0|1|A|A|1620
9BS0|1|A|G|1621
9BS0|1|A|C|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2