J3_9BS0_013

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*AGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BS0_013 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.2283

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

9BS0|1|A|C|2818
9BS0|1|A|A|2819
9BS0|1|A|U|2820
*
9BS0|1|A|A|2831
9BS0|1|A|G|2832
9BS0|1|A|U|2833
9BS0|1|A|A|2834
9BS0|1|A|A|2835
9BS0|1|A|G|2836
*
9BS0|1|A|C|2914
9BS0|1|A|G|2915
9BS0|1|A|A|2916
9BS0|1|A|G|2917
9BS0|1|A|G|2918

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3