J3_9BSS_001

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BSS_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1476

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9BSS|1|A|G|30
9BSS|1|A|C|31
*
9BSS|1|A|G|521
9BSS|1|A|U|522
9BSS|1|A|G|523
9BSS|1|A|A|524
9BSS|1|A|A|525
9BSS|1|A|A|526
9BSS|1|A|A|527
9BSS|1|A|G|528
*
9BSS|1|A|C|555
9BSS|1|A|C|556

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein bL20

Chain P

Large ribosomal subunit protein uL24