J3_9BSS_002
3D structure
- PDB id
- 9BSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 45SRbgA particle in complex with RbgA and YphC. Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9BSS|1|A|U|34, 9BSS|1|A|U|495, 9BSS|1|A|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BSS_002 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.1366
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9BSS|1|A|C|32
9BSS|1|A|U|33
9BSS|1|A|U|34
9BSS|1|A|G|35
*
9BSS|1|A|C|492
9BSS|1|A|G|493
9BSS|1|A|A|494
9BSS|1|A|U|495
9BSS|1|A|A|496
9BSS|1|A|G|497
9BSS|1|A|U|498
9BSS|1|A|G|499
9BSS|1|A|A|500
9BSS|1|A|A|501
9BSS|1|A|C|502
9BSS|1|A|C|503
9BSS|1|A|A|504
9BSS|1|A|G|505
9BSS|1|A|U|506
9BSS|1|A|A|507
9BSS|1|A|C|508
*
9BSS|1|A|G|515
9BSS|1|A|G|516
9BSS|1|A|A|517
9BSS|1|A|A|518
9BSS|1|A|A|519
9BSS|1|A|G|520
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain L
- Large ribosomal subunit protein bL20
- Chain O
- Large ribosomal subunit protein uL23
- Chain U
- Large ribosomal subunit protein bL34
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