J3_9BSS_008

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

9BSS|1|A|C|1652, 9BSS|1|A|A|1654, 9BSS|1|A|A|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BSS_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.3411

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

9BSS|1|A|C|1344
9BSS|1|A|U|1345
9BSS|1|A|A|1346
9BSS|1|A|A|1347
9BSS|1|A|G|1348
*
9BSS|1|A|C|1650
9BSS|1|A|G|1651
9BSS|1|A|C|1652
9BSS|1|A|A|1653
9BSS|1|A|A|1654
9BSS|1|A|A|1655
9BSS|1|A|C|1656
*
9BSS|1|A|G|1665
9BSS|1|A|U|1666
9BSS|1|A|A|1667
9BSS|1|A|G|1668

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein bL34