J3_9BSS_009

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

9BSS|1|A|C|1384, 9BSS|1|A|A|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BSS_009 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1814

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.3

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9BSS|1|A|U|1383
9BSS|1|A|C|1384
9BSS|1|A|G|1385
9BSS|1|A|G|1386
9BSS|1|A|G|1387
9BSS|1|A|A|1388
9BSS|1|A|C|1389
*
9BSS|1|A|G|1420
9BSS|1|A|A|1421
9BSS|1|A|C|1422
9BSS|1|A|A|1423
9BSS|1|A|A|1424
*
9BSS|1|A|U|1441
9BSS|1|A|A|1442

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL23