J3_9BSS_012

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9BSS|1|A|A|2547, 9BSS|1|A|U|2548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BSS_012 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1467

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9BSS|1|A|C|2546
9BSS|1|A|A|2547
9BSS|1|A|U|2548
9BSS|1|A|C|2549
*
9BSS|1|A|G|2574
9BSS|1|A|U|2575
9BSS|1|A|U|2576
*
9BSS|1|A|A|2590
9BSS|1|A|U|2591
9BSS|1|A|U|2592
9BSS|1|A|A|2593
9BSS|1|A|A|2594
9BSS|1|A|A|2595
9BSS|1|A|G|2596

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein uL14

Chain V

Ribosome biogenesis GTPase A