J3_9BUP_001

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAC*GUUG*CAUGUCG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|C|113
9BUP|1|AA|A|114
9BUP|1|AA|A|115
9BUP|1|AA|A|116
9BUP|1|AA|C|117
*
9BUP|1|AA|G|160
9BUP|1|AA|U|161
9BUP|1|AA|U|162
9BUP|1|AA|G|163
*
9BUP|1|AA|C|268
9BUP|1|AA|A|269
9BUP|1|AA|U|270
9BUP|1|AA|G|271
9BUP|1|AA|U|272
9BUP|1|AA|C|273
9BUP|1|AA|G|274

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein L35

Chain AJ

60S ribosomal protein L7a

Chain AL

60S ribosomal protein L13

Chain AP

Ribosomal protein L15

Chain Ab

60S ribosomal protein L36