J3_9BUP_006
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAACAAG*UUAAAA*UAUACAGUAC
- Length
- 25 nucleotides
- Bulged bases
- 9BUP|1|AA|A|448, 9BUP|1|AA|U|694, 9BUP|1|AA|U|699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|AA|G|446
9BUP|1|AA|A|447
9BUP|1|AA|A|448
9BUP|1|AA|A|449
9BUP|1|AA|A|450
9BUP|1|AA|C|451
9BUP|1|AA|A|452
9BUP|1|AA|A|453
9BUP|1|AA|G|454
*
9BUP|1|AA|U|501
9BUP|1|AA|U|502
9BUP|1|AA|A|503
9BUP|1|AA|A|504
9BUP|1|AA|A|505
9BUP|1|AA|A|506
*
9BUP|1|AA|U|692
9BUP|1|AA|A|693
9BUP|1|AA|U|694
9BUP|1|AA|A|695
9BUP|1|AA|C|696
9BUP|1|AA|A|697
9BUP|1|AA|G|698
9BUP|1|AA|U|699
9BUP|1|AA|A|700
9BUP|1|AA|C|701
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A8
- 60S ribosomal protein L32
- Chain A9
- 60S ribosomal protein L35ae
- Chain AI
- 60S ribosomal protein L6
- Chain AW
- 60S ribosomal protein L17
Coloring options: