J3_9BUP_007
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUC*GAGGAAUUUUAAA*UUAAGUU
- Length
- 23 nucleotides
- Bulged bases
- 9BUP|1|AA|A|646, 9BUP|1|AA|U|647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|AA|A|512
9BUP|1|AA|U|513
9BUP|1|AA|C|514
*
9BUP|1|AA|G|641
9BUP|1|AA|A|642
9BUP|1|AA|G|643
9BUP|1|AA|G|644
9BUP|1|AA|A|645
9BUP|1|AA|A|646
9BUP|1|AA|U|647
9BUP|1|AA|U|648
9BUP|1|AA|U|649
9BUP|1|AA|U|650
9BUP|1|AA|A|651
9BUP|1|AA|A|652
9BUP|1|AA|A|653
*
9BUP|1|AA|U|680
9BUP|1|AA|U|681
9BUP|1|AA|A|682
9BUP|1|AA|A|683
9BUP|1|AA|G|684
9BUP|1|AA|U|685
9BUP|1|AA|U|686
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L28
- Chain A5
- 60S ribosomal protein L7
- Chain A8
- 60S ribosomal protein L32
- Chain A9
- 60S ribosomal protein L35ae
- Chain AF
- 60S ribosomal protein L4
- Chain AI
- 60S ribosomal protein L6
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