J3_9BUP_008

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAUCCCCU*ACU*ACUGG

Length

17 nucleotides

Bulged bases

9BUP|1|AA|U|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|C|540
9BUP|1|AA|A|541
9BUP|1|AA|A|542
9BUP|1|AA|U|543
9BUP|1|AA|C|544
9BUP|1|AA|C|545
9BUP|1|AA|C|546
9BUP|1|AA|C|547
9BUP|1|AA|U|548
*
9BUP|1|AA|A|580
9BUP|1|AA|C|581
9BUP|1|AA|U|582
*
9BUP|1|AA|A|608
9BUP|1|AA|C|609
9BUP|1|AA|U|610
9BUP|1|AA|G|611
9BUP|1|AA|G|612

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L4

Chain AN

60S ribosomal protein L14

Chain AU

60S ribosomal protein L18a