J3_9BUP_009

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9BUP|1|AA|A|936, 9BUP|1|AA|G|1043, 9BUP|1|AA|A|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BUP_009 not in the Motif Atlas

Homologous match to J3_8CRE_009

Geometric discrepancy: 0.064

The information below is about J3_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9BUP|1|AA|U|933
9BUP|1|AA|G|934
9BUP|1|AA|A|935
9BUP|1|AA|A|936
9BUP|1|AA|C|937
9BUP|1|AA|U|938
9BUP|1|AA|A|939
*
9BUP|1|AA|U|1024
9BUP|1|AA|A|1025
9BUP|1|AA|G|1026
*
9BUP|1|AA|C|1042
9BUP|1|AA|G|1043
9BUP|1|AA|A|1044
9BUP|1|AA|A|1045

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2

Chain AP

Ribosomal protein L15

Chain Ac

Ribosomal protein L37