J3_9BUP_010

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CGAGUU*AUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|G|948
9BUP|1|AA|A|949
9BUP|1|AA|G|950
*
9BUP|1|AA|C|982
9BUP|1|AA|G|983
9BUP|1|AA|A|984
9BUP|1|AA|G|985
9BUP|1|AA|U|986
9BUP|1|AA|U|987
*
9BUP|1|AA|A|1010
9BUP|1|AA|U|1011
9BUP|1|AA|U|1012
9BUP|1|AA|U|1013
9BUP|1|AA|C|1014

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2

Chain AT

60S ribosomal protein L19

Chain Aa

60S ribosomal protein L34

Chain Ac

Ribosomal protein L37

Chain Ah

Large ribosomal subunit protein eL43