J3_9BUP_015

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA*UAUAUAUAAAU*AC

Length

15 nucleotides

Bulged bases

9BUP|1|AA|U|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|G|1780
9BUP|1|AA|A|1781
*
9BUP|1|AA|U|1790
9BUP|1|AA|A|1791
9BUP|1|AA|U|1792
9BUP|1|AA|A|1793
9BUP|1|AA|U|1794
9BUP|1|AA|A|1795
9BUP|1|AA|U|1796
9BUP|1|AA|A|1797
9BUP|1|AA|A|1798
9BUP|1|AA|A|1799
9BUP|1|AA|U|1800
*
9BUP|1|AA|A|2032
9BUP|1|AA|C|2033

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A1

60S ribosomal protein L27

Chain Aa

60S ribosomal protein L34

Chain Ad

60S ribosomal protein L38