J3_9BUP_017

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUAUAA*UUGAACUC*GUA

Length

18 nucleotides

Bulged bases

9BUP|1|AA|U|1855, 9BUP|1|AA|U|1965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|U|1854
9BUP|1|AA|U|1855
9BUP|1|AA|U|1856
9BUP|1|AA|A|1857
9BUP|1|AA|U|1858
9BUP|1|AA|A|1859
9BUP|1|AA|A|1860
*
9BUP|1|AA|U|1898
9BUP|1|AA|U|1899
9BUP|1|AA|G|1900
9BUP|1|AA|A|1901
9BUP|1|AA|A|1902
9BUP|1|AA|C|1903
9BUP|1|AA|U|1904
9BUP|1|AA|C|1905
*
9BUP|1|AA|G|1964
9BUP|1|AA|U|1965
9BUP|1|AA|A|1966

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Aa

60S ribosomal protein L34

Chain Ad

60S ribosomal protein L38